Easy Moist Pumpkin Cream Cheese Muffins

Posted on August 31, 2025 · By Elisa

Pumpkin Cream Cheese Muffins

There’s truly no better way to welcome autumn than by baking a batch of soft, tender pumpkin cream cheese muffins. With every bite, you’ll taste warm spices, velvety pumpkin, and a dreamy cream cheese swirl that takes these muffins from simple to spectacular. Not only do they make your kitchen smell like a cozy café, but they also deliver a comforting experience that’s hard to resist. Whether you’re enjoying one with your morning coffee or serving them at a fall brunch, these muffins are sure to impress.

What sets this recipe apart is how beautifully the tangy cream cheese pairs with the rich pumpkin base. The muffins have the perfect balance of sweetness and spice, and the cream cheese center remains soft and luscious even after baking. Plus, they’re incredibly easy to make, requiring basic pantry ingredients and simple tools. It’s no wonder they’ve become a favorite in many households when pumpkin season arrives.

Why You’ll Love These Pumpkin Cream Cheese Muffins

These Pumpkin Cream Cheese Muffins are bakery-worthy but made right at home. The texture is incredibly soft, thanks to the moisture-rich pumpkin puree and sunflower oil. The use of brown and granulated sugar gives a lovely caramel depth, and the pumpkin pie spice adds that familiar, cozy warmth. But what really elevates them is the sweet and creamy swirl of vanilla-scented cream cheese nestled right into the top of each muffin.

Even better, the process is beginner-friendly and forgiving. If you’re in the mood for more pumpkin goodness, you’ll also enjoy these Pumpkin Brownies or the ultra-decadent Pumpkin Ricotta Pasta Bake, both fall-themed favorites with tons of flavor.

Who These Muffins Are Perfect For

Whether you’re an experienced baker or just diving into the world of homemade treats, this recipe is perfect for:

  • Anyone craving a cozy autumn snack
  • Families looking for a kid-friendly breakfast idea
  • Hosts planning a festive fall gathering
  • Pumpkin lovers who want a twist on the classic muffin
  • Home bakers looking for something new, easy, and impressive

These muffins also make thoughtful edible gifts—just pop them into a decorative tin, and you’ve got a delicious homemade surprise.

Ingredients You’ll Need for Pumpkin Cream Cheese Muffins

This Pumpkin Cream Cheese Muffins relies on wholesome, easy-to-find ingredients that come together beautifully.

Pumpkin Muffin Batter:

  • 1 ½ cups (360ml) pure pumpkin puree
  • ½ cup (110g) packed light brown sugar
  • ½ cup + 2 tbsp (125g) granulated sugar
  • 2 large eggs, room temperature
  • ½ cup (120ml) sunflower oil
  • 1 tsp (5ml) vanilla extract
  • 2 cups (284g) all-purpose flour
  • 1 ½ tsp pumpkin pie spice
  • ½ tsp cinnamon
  • 1 tsp baking powder
  • ¾ tsp baking soda
  • ½ tsp salt
  • ⅓ cup (80ml) whole milk

Cream Cheese Filling:

  • 4 oz (113g) cream cheese, softened
  • 2 tbsp (25g) granulated sugar
  • 1 tsp (3g) flour
  • ½ tsp vanilla extract
  • 2 tsp (10ml) whole milk

Optional: Chopped pumpkin seeds (pepitas) for topping.

How to Make the Pumpkin Cream Cheese Muffins Step by Step

Begin by preheating your oven to 425°F and lining a standard muffin pan with parchment liners. In a large mixing bowl, combine the pumpkin puree, brown sugar, and granulated sugar. Whisk until smooth and slightly glossy. Add in the eggs, sunflower oil, and vanilla extract, then whisk again until everything is well incorporated.

In a separate bowl, whisk together the flour, pumpkin pie spice, cinnamon, baking powder, baking soda, and salt. Gradually fold the dry mixture into the wet mixture. Before the flour is fully incorporated, pour in the milk and continue folding until just combined. The batter may have a few lumps, which is totally fine. Let the batter rest for 30 minutes—it helps with texture and ensures better rise during baking.

If you’re a muffin lover, you’ll also want to check out these unique White Chocolate Chip Matcha Muffins for something equally delicious but different.

Mixing the Cream Cheese Filling Like a Pro

While the muffin batter rests, it’s the perfect time to make your cream cheese filling. In a small bowl, beat the softened cream cheese with granulated sugar, flour, and vanilla extract. Add the milk and beat until the mixture is smooth and creamy.

Transfer the filling into a piping bag or a zip-top bag with the corner snipped off. This will help you swirl the mixture easily into each muffin later. If you’re craving more cream cheese treats, try the decadent Coffee Cheesecake or Gingerbread Cheesecake Cookies from the blog.

Assembling and Baking the Pumpkin Cream Cheese Muffins

After resting, divide the batter evenly among the 12 muffin liners, filling each cup almost to the top. Next, insert the tip of your piping bag about ¼ inch into the center of each muffin. Gently squeeze and swirl a circle of cream cheese about 1 inch in diameter on top.

If desired, sprinkle chopped pumpkin seeds around the cream cheese for a crunchy finish. Now bake the muffins at 425°F for 5 minutes, then reduce the temperature to 350°F and bake for an additional 12–15 minutes. Let cool in the pan for 5 minutes before transferring to a rack to cool completely.

For another spooky seasonal treat, try Halloween Chocolate Chip Cookies or Spider Web Brownies—perfect companions for your muffin tray this October.

Helpful Tools for Making These Muffins

To make this Pumpkin Cream Cheese Muffins easier and faster, gather the following tools:

  • Large and medium mixing bowls
  • Whisk and silicone spatula
  • Hand mixer or stand mixer (optional)
  • Measuring cups and spoons
  • 12-cup muffin tin
  • Parchment muffin liners
  • Piping bag or sandwich bag
  • Ice cream scoop or large spoon
  • Wire cooling rack

Top Tips for Perfect Pumpkin Cream Cheese Muffins

  1. Don’t skip the batter resting – It really helps with muffin structure.
  2. Use room temperature eggs and cream cheese – They incorporate more easily.
  3. Do not overmix the batter – Overmixing leads to dense muffins.
  4. Watch the baking time – Every oven varies, so check for doneness with a toothpick.
  5. Let the muffins cool before serving – This allows the cream cheese to set properly.

Serving and Pairing Suggestions

These Pumpkin Cream Cheese Muffins are a delight served warm with a cup of tea or coffee. For a fun fall breakfast spread, pair them with Pumpkin Coffee Syrup and a side of Sweet Potato Breakfast Bowl. They also make a wonderful mid-morning snack, paired with sliced fruit or a chai latte.

Storing and Freezing Tips

Once cooled, store the muffins in an airtight container in the fridge for up to 4 days. Because of the cream cheese filling, refrigeration is essential. To freeze, place the muffins in a freezer-safe bag or container and store for up to 2 months. Thaw overnight in the fridge or microwave for 10–15 seconds before serving.

Variations and Creative Additions

This Pumpkin Cream Cheese Muffins is endlessly adaptable. Here are some ideas:

  • Add mini chocolate chips for a pumpkin chocolate twist.
  • Mix chopped pecans or walnuts into the batter for added crunch.
  • Use maple syrup instead of some sugar for a deeper fall flavor.
  • Swirl in apple butter with the cream cheese for an extra seasonal touch.
  • Try it as mini muffins for a bite-sized treat.

If you’re feeling adventurous, you may also like these Peanut Butter Spider Cookies or Pumpkin Pie Gooey Butter Cake for another take on seasonal indulgence.

Troubleshooting and Common Mistakes to Avoid

  • Cold cream cheese won’t mix smoothly. Make sure it’s softened first.
  • Overfilling the liners can cause the cream cheese to sink. Leave a bit of room for rise.
  • Skipping the rest period may result in flat muffins.
  • Undermixing the cream cheese filling may leave lumps—mix until smooth.

Frequently Asked Questions

Can I make these ahead of time?
Yes! These muffins can be made a day in advance and stored in the fridge.

Can I use low-fat cream cheese?
You can, but full-fat gives the best texture and flavor.

Can I make these muffins gluten-free?
Yes, use a 1:1 gluten-free flour blend. Texture may differ slightly but still delicious.

Can I double the recipe?
Absolutely! This recipe doubles well—just bake in two batches if needed.

Final Thoughts: The Ultimate Fall Muffin Recipe

These pumpkin cream cheese muffins offer everything you could want in a fall treat. They’re moist, warmly spiced, and bursting with creamy flavor. Not only do they look beautiful, but they also taste like something you’d find at a high-end bakery. Whether you’re baking for your family, hosting a fall brunch, or prepping snacks for the week, these muffins deserve a spot on your list.

If you loved this Pumpkin Cream Cheese Muffins , please share it with your friends or family, and don’t forget to subscribe to our blog for more cozy seasonal favorites. Happy baking!

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Irresistible Pumpkin Cream Cheese Muffins for Cozy Fall Mornings


  • Author: Elisa
  • Total Time: 40 minutes
  • Yield: 12 muffins 1x
  • Diet: Vegetarian

Description

These Pumpkin Cream Cheese Muffins are moist, warmly spiced, and swirled with a luscious cream cheese filling. Perfect for cozy autumn mornings, family brunches, or as a make-ahead breakfast. Beginner-friendly yet bakery-worthy!


Ingredients

Scale

For the Pumpkin Muffin Batter:

  • 1 1/2 cups (360ml) pure pumpkin puree
  • 1/2 cup (110g) packed light brown sugar
  • 1/2 cup + 2 tbsp (125g) granulated sugar
  • 2 large eggs, at room temperature
  • 1/2 cup (120ml) sunflower oil
  • 1 tsp (5ml) pure vanilla extract
  • 2 cups (284g) all-purpose flour
  • 1 1/2 tsp pumpkin pie spice
  • 1/2 tsp cinnamon
  • 1 tsp baking powder
  • 3/4 tsp baking soda
  • 1/2 tsp salt
  • 1/3 cup (80ml) whole milk

For the Cream Cheese Filling:

  • 4 oz (113g) cream cheese, at room temperature
  • 2 tbsp (25g) granulated sugar
  • 1 tsp (3g) all-purpose flour
  • 1/2 tsp pure vanilla extract
  • 2 tsp (10ml) whole milk

Instructions

  1. Preheat & Prepare: Preheat oven to 425°F (220°C). Line a 12-cup muffin tin with paper liners.
  2. Make the Muffin Batter: In a large bowl, whisk pumpkin puree, brown sugar, and granulated sugar until smooth. Add eggs, oil, and vanilla and whisk until combined. In another bowl, whisk flour, pumpkin pie spice, cinnamon, baking powder, baking soda, and salt. Fold dry into wet, then add milk and mix until just combined. Let batter rest 30 minutes.
  3. Prepare Cream Cheese Filling: Beat cream cheese, sugar, flour, and vanilla until smooth. Add milk and mix again. Transfer to a piping bag or zip-top bag.
  4. Assemble: Divide rested batter evenly among muffin cups. Pipe about 1/2 tbsp of cream cheese filling into the top of each muffin, creating a swirl. Optionally sprinkle pumpkin seeds around the swirl.
  5. Bake: Bake at 425°F for 5 minutes, then reduce to 350°F (175°C) and bake 12–15 minutes more. Cool in pan 5 minutes, then transfer to a rack to cool completely.

Notes

  • Don’t overmix: Keep the batter tender by mixing only until combined.
  • Rest the batter: This 30-minute rest improves rise and texture.
  • Use room temperature ingredients: Ensures smooth mixing and better results.
  • Storage: Refrigerate in an airtight container for up to 5 days. Freeze up to 2 months, wrapped individually.
  • Variations: Make gluten-free with 1:1 flour, dairy-free with vegan cream cheese and plant milk, or add chocolate chips or chopped nuts.
  • Prep Time: 20 minutes
  • Cook Time: 20 minutes
  • Category: Dessert
  • Method: Baked
  • Cuisine: American

Nutrition

  • Serving Size: 1 muffin

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